Degrees of Freedom Tutorial

A lot of researchers seem to be struggling with their understanding of the statistical concept of degrees of freedom. Most do not really care about why degrees of freedom are important to statistical tests, but just want to know how to calculate and report them. This page will help. For those interested in learning more about degrees of freedom, take a look at the following resources:

I couldn’t find any resource on the web that explains calculating degrees of freedom in a simple and clear manner and believe this page will fill that void. It reflects my current understanding of degrees of freedom, based on what I read in textbooks and scattered sources on the web. Feel free to add or comment.

Conceptual Understanding

Let’s start with a simple explanation of degrees of freedom. I will describe how to calculate degrees of freedom in an F-test (ANOVA) without much statistical terminology. When reporting an ANOVA, between the brackets you write down degrees of freedom 1 (df1) and degrees of freedom 2 (df2), like this: “F(df1, df2) = …”. Df1 and df2 refer to different things, but can be understood the same following way.

Imagine a set of three numbers, pick any number you want. For instance, it could be the set [1, 6, 5]. Calculating the mean for those numbers is easy: (1 + 6 + 5) / 3 = 4.

Now, imagine a set of three numbers, whose mean is 3. There are lots of sets of three numbers with a mean of 3, but for any set the bottom line is this: you can freely pick the first two numbers, any number at all, but the third (last) number is out of your hands as soon as you picked the first two. Say our first two numbers are the same as in the previous set, 1 and 6, giving us a set of two freely picked numbers, and one number that we still need to choose, x: [1, 6, x].  For this set to have a mean of 3, we don’t have anything to choose about x. X has to be 2, because (1 + 6 + 2) / 3 is the only way to get to 3. So, the first two values were free for you to choose, the last value is set accordingly to get to a given mean. This set is said to have two degrees of freedom, corresponding with the number of values that you were free to choose (that is, that were allowed to vary freely).

This generalizes to a set of any given length. If I ask you to generate a set of 4, 10, or 1.000 numbers that average to 3, you can freely choose all numbers but the last one. In those sets the degrees of freedom are respectively, 3, 9, and 999. The general rule then for any set is that if equals the number of values in the set, the degrees of freedom equals n – 1.

This is the basic method to calculate degrees of freedom, just n – 1. It is as simple as that. The thing that makes it seem more difficult, is the fact that in an ANOVA, you don’t have just one set of numbers, but there is a system (design) to the numbers. In the simplest form you test the mean of one set of numbers against the mean of another set of numbers (one-way ANOVA). In more complicated one-way designs, you test the means of three groups against each other. In a 2 x 2 design things seem even more complicated. Especially if there’s a within-subjects variable involved (Note: all examples on this page are between-subjects, but the reasoning mostly generalizes to within-subjects designs). However things are not as complicated as you might think. It’s all pretty much the same reasoning: how many values are free to vary to get to a given number?

Df1

Df1 is all about means and not about single observations. The value depends on the exact design of your test. Basically, the value represents the number of cell means that are free to vary to get to a given grand mean. The grand mean is just the mean across all groups and conditions of your entire sample. The cell means are nothing more than the means per group and condition. We’ll call the number of cells (or cell means) k.

Let’s start off with a one-way ANOVA. We have two groups that we want to compare, so we have two cells. If we know the mean of one of the cells and the grand mean, the other cell must have a specific value such that (cell mean 1 + cell mean 2) / 2 = grand mean (this example assumes equal cell sample sizes, but unequal cell sample sizes would not change the number of degrees of freedom). Conclusion: for a two-group design, df1 = 1.

Sticking to the one-way ANOVA, but moving on to three groups. We now have three cells, so we have three means and a grand mean. Again, how many means are free to vary to get to the given grand mean? That’s right, 2. So df1 = 2. See the pattern? For one-way ANOVA’s df1 = k – 1.

Moving on to an ANOVA with four groups. We know the answer if this is a one-way ANOVA (that is, a 4 x 1 design): df1 = k – 1 = 4 -1 = 3. However, what if this is a two-way ANOVA (a 2 x 2 design)? We still have four means, so to get to a given grand mean, we can have three freely varying cell means, right? Although this is true, we have more to deal with than just the grand mean, namely the marginal means. The marginal means are the combined cell means of one variable, given a specific level of the other variable. Let’s say our 2 x 2 ANOVA follows a 2 (gender: male vs. female) x 2 (eye color: blue vs. brown) design. In that case, the grand mean is the average of all observations in all 4 cells. The marginal means are the average of all eye colors for male participants, the average of all eye colors for female participants, the average of all genders for blue-eyed participants, and the average of all genders for brown-eyed participants. The following table shows the same thing:

Brown eyes Blue eyes
Male CELL MEAN
Brown eyed males
CELL MEAN
Blue eyed males
MARGINAL MEAN
of brown eyed males
and blue eyed males
Female CELL MEAN
Brown eyed females
CELL MEAN
Blue eyed females
MARGINAL MEAN
of brown eyed females
and blue eyed females
MARGINAL MEAN
of brown eyed males
and brown eyed females
MARGINAL MEAN
of blue eyed males
and blue eyed females
GRAND MEAN

The reason that we are now dealing with marginal means is that we are interested in interactions. In a 4 x 1 one-way ANOVA, no interactions can be calculated. In our 2 x 2 two-way ANOVA, we can. For instance, we might be interested in whether females perform better than males depending on their eye color. Now, because we are interested in cell means differences in a specific way (i.e., we are not just interested in whether one cell mean deviates from the grand mean, but we are also interested in more complex patterns), we need to pay attention to the marginal means. As a consequence, we now have less freedom to vary our cell means, because we need to account for the marginal means (if you want to know how this all works, you should read up on how the sums of squares are partitioned in 2 x 2 ANOVA’s). It is also important to realize that if all marginal means are fixed, the grand mean is fixed too. In other words, we do not have to worry about the grand mean anymore for calculating our df1 in a two-way ANOVA, because we are already worrying about the marginal means. As a consequence, our df1 will not lose a degree of freedom because we do not want to get to a specific grand mean. Our df1 will only lose degrees of freedom to get to the specific marginal means.

Now, how many cell means are free to vary before we need to fill in the other cell means to get to the four marginal means in the 2 x 2 design? Let’s start with freely picking the cell mean for brown eyed males. We know the marginal mean for brown eyed males and blue eyed males together (it is given, all marginal means are), so I guess we can’t choose the blue eyed males cell mean freely. There goes one degree of freedom. We also know the marginal mean for brown eyed males and brown eyed females together. That means we can’t choose the brown eyed female cell mean freely either. And as we know the other two marginal means, we have no choice in what we put in the blue eyed females cell mean to get to the correct marginal means. So, we chose one cell mean, and the other three cell means had to be filled in as a consequence to get to the correct marginal means. You know what that means don’t you? We only have one degree of freedom in df1 for a 2 x 2 design. That’s different from the three degrees of freedom in a 4 x 1 design. The same number of groups and they might even contain the same observations, but we get a different number of degrees of freedom. So now you see that using the degrees of freedom, you can infer a lot about the design of the test.

You could do the same mental exercise for a 2 x 3 design, but it is tedious for me to write up, so I am going to give you the general rule. Every variable in your design has a certain number of levels. Variable 1 in the 2 x 3 design has 2 levels, variable 2 has 3 levels. You get df1 when you multiply the levels of all variables with each other, but with each variable, subtract one level. So in the 2 x 3 design, df1 would be (2 – 1) x (3 – 1)  = 2 degrees of freedom. Back to the 2 x 2 design, df1 would be (2 – 1) x (2 – 1) = 1 degrees of freedom. Now let’s see what happens with a 2 x 2 x 2 design: (2 – 1) x (2 – 1) x (2 – 1) = still 1 degrees of freedom. A 3 x 3 x 4 design (I hope you’ll never have to analyze that one): (3 – 1) x ( 3 – 1) x (4 -1) = 2 x 2 x 3 = 12 degrees of freedom.

By now, you should be able to calculate df1 in F(df1, df2) with ease. By the way, most statistical programs give you this value for free. However, now you’ll be able to judge whether researchers have performed the right analyses in their papers to some extent based on their df1 value. Also, df1 is calculated the same way in a within-subjects design. Just treat the within-subjects variable as any other variable. Let’s move on to df2.

DF2

Whereas df1 was all about how the cell means relate to the grand mean or marginal means, df2 is about how the single observations in the cells relate to the cell means. Basically the df2 is the total number of observations in all cells (n) minus the degrees of freedoms lost because the cell means are set (that is, minus the number of cell means or groups/conditions: k). Df2 = k, that’s all folks! Say we have 150 participants across four conditions. That means we will have df2 = 150 – 4 = 146, regardless of whether the design is 2 x 2, or 4 x 1.

Most statistical packages give you df2 too. In SPSS, it’s called df error, in other packages it might be called df residuals.

For the case of within subjects-designs, things can become a bit more complicated. The following paragraphs are work in progress. The calculation of df2 for a repeated measures ANOVA with one within-subjects factor is as follows: df2 = df_total – df_subjects – df_factor, where df_total = number of observations (across all levels of the within-subjects factor, n) – 1, df_subjects = number of participants (N) – 1, and df_factor = number of levels (k) – 1. Basically, the take home message for repeated measures ANOVA is that you lose one additional degree of freedom for the subjects (if you’re interested: this is because the sum of squares representing individual subjects’ average deviation from the grand mean is partitioned separately, whereas in between-subjects designs, that’s not the case. To get to a specific subjects sum of squares, N – 1 subject means are free to vary, hence you lose one additional degree of freedom).

Conclusion

You should be able to calculate df1 and df2 with ease now (or identify it from the output of your statistical package like SPSS). Keep in mind that the degrees of freedom you specify are those of the design of the effect that you are describing. There is no such thing as one set of degrees of freedom that is appropriate for every effect of your design (although, in some cases, they might seem to have the same value for every effect).

Moreover, although we have been discussing means in this tutorial, for a complete understanding, you should learn about sums of squares, how those translate into variance, and how test statistics, such as F-ratio, work. This will make clear to you how degrees of freedom are used in statistical analysis. The short functional description is that, primarily, degrees of freedom affect which critical values are chosen for test statistics of interest, given a specific alpha level (remember those look-up tables in your early statistics classes?).

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  1. Pingback: Degrees of freedom statistics (DOF) | Jason Bailey

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